STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L195_g014578DNA ligase 1-like protein. (270 aa)    
Predicted Functional Partners:
L195_g010130
ATP-dependent DNA helicase 2 subunit ku80-like protein.
   
 0.959
L195_g012564
DNA-repair protein XRCC1.
   
 0.956
L195_g000548
Polynucleotide 3'-phosphatase ZDP-like protein.
  
 0.931
L195_g012443
DNA repair protein XRCC4-like.
    
 0.912
L195_g056783
Proliferating cell nuclear antigen large form protein.
   
 0.876
L195_g056919
Proliferating cell nuclear antigen large form protein.
   
 0.876
L195_g036504
Proliferating cell nuclear antigen large form protein.
   
 0.876
L195_g038510
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.876
L195_g041586
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.876
L195_g020638
Proliferating cell nuclear antigen large form protein.
   
 0.876
Your Current Organism:
Trifolium pratense
NCBI taxonomy Id: 57577
Other names: T. pratense, Trifolium pratense L., peavine clover, purple clover, red clover, rotklee
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.