Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
VS_0145General secretion pathway protein N. (259 aa)    
Predicted Functional Partners:
VS_0144
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.973
VS_0143
Type II secretory pathway, component EpsL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.969
VS_0139
Type II secretory pathway, pseudopilin EpsH.
 
   
 0.963
VS_0141
Type II secretory pathway, component EpsJ.
 
   
 0.954
VS_0140
Type II secretory pathway, pseudopilin EpsI.
 
   
 0.953
VS_0134
Type II secretory pathway, component EpsC.
 
   
 0.947
VS_0142
Type II secretory pathway, component EpsK.
 
   
 0.947
VS_0135
Type II secretory pathway, component EpsD.
 
   
 0.884
VS_0138
Type II secretory pathway, pseudopilin EpsG.
 
   
 0.802
VS_0934
Hypothetical protein.
  
     0.748
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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