Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VS_0725 | cmoB | VS_0725 | VS_1101 | 2-polyprenyl-6-methoxyphenol hydroxylase. | Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.470 |
VS_0725 | cmoM | VS_0725 | VS_1093 | 2-polyprenyl-6-methoxyphenol hydroxylase. | Protein smtA; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. | 0.515 |
VS_1098 | VS_1099 | VS_1098 | VS_1099 | Hypothetical protein. | Gonadoliberin III-related protein. | 0.957 |
VS_1098 | VS_1100 | VS_1098 | VS_1100 | Hypothetical protein. | Hypothetical protein. | 0.932 |
VS_1098 | cmoB | VS_1098 | VS_1101 | Hypothetical protein. | Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.491 |
VS_1099 | VS_1098 | VS_1099 | VS_1098 | Gonadoliberin III-related protein. | Hypothetical protein. | 0.957 |
VS_1099 | VS_1100 | VS_1099 | VS_1100 | Gonadoliberin III-related protein. | Hypothetical protein. | 0.932 |
VS_1099 | cmoB | VS_1099 | VS_1101 | Gonadoliberin III-related protein. | Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.491 |
VS_1100 | VS_1098 | VS_1100 | VS_1098 | Hypothetical protein. | Hypothetical protein. | 0.932 |
VS_1100 | VS_1099 | VS_1100 | VS_1099 | Hypothetical protein. | Gonadoliberin III-related protein. | 0.932 |
VS_1100 | cmoA | VS_1100 | VS_1102 | Hypothetical protein. | Conserved hypothetical protein; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.446 |
VS_1100 | cmoB | VS_1100 | VS_1101 | Hypothetical protein. | Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.509 |
VS_II0211 | VS_II0212 | VS_II0211 | VS_II0212 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.951 |
VS_II0211 | VS_II0874 | VS_II0211 | VS_II0874 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein. | 0.792 |
VS_II0211 | cmoA | VS_II0211 | VS_1102 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.464 |
VS_II0211 | cmoB | VS_II0211 | VS_1101 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.500 |
VS_II0212 | VS_II0211 | VS_II0212 | VS_II0211 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.951 |
VS_II0212 | cmoB | VS_II0212 | VS_1101 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.576 |
VS_II0212 | cmoM | VS_II0212 | VS_1093 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Protein smtA; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. | 0.493 |
VS_II0874 | VS_II0211 | VS_II0874 | VS_II0211 | Conserved hypothetical protein. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.792 |
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