Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_1111Hypothetical protein. (100 aa)    
Predicted Functional Partners:
VS_1110
Cytochrome d ubiquinol oxidase subunit II.
  
    0.849
VS_1109
Cytochrome d ubiquinol oxidase subunit I.
  
    0.843
VS_3027
Putative membrane protein.
  
     0.774
uspB
Universal stress protein B homolog.
  
     0.772
VS_0130
Hypothetical protein.
  
     0.772
VS_2469
Similar to DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.769
VS_II0461
Helicase IV.
  
     0.763
VS_2801
Hypothetical protein.
  
     0.762
VS_2459
Putative smp protein.
  
     0.758
VS_1049
Hypothetical protein; Belongs to the UPF0304 family.
  
     0.753
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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