Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
viuBVibriobactin utilization protein; Function of homologous gene experimentally demonstrated in another organism; carrier. (271 aa)    
Predicted Functional Partners:
viuG
ABC transporter: permease protein; Function of homologous gene experimentally demonstrated in another organism; transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
  0.651
VS_II0005
ABC transporter IM-ABC: Transmembrane and ATP binding protein.
   
  0.628
VS_II0509
ABC transporter: Transmembrane and ATP-binding protein.
   
  0.628
VS_II0510
ABC transporter: Transmembrane and ATP-binding protein.
   
  0.628
VS_II0861
ABC transporter, transmembrane protein-ATP-binding protein (IM, ABC).
   
  0.628
VS_II0862
ABC transporter (IM-ABC).
   
  0.628
VS_1414
ATP-binding/permease protein.
   
  0.569
VS_1565
ABC transporter: transmembrane and ATP binding protein.
   
  0.569
msbA
Transport ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
  0.569
VS_II0026
ABC transporters: Transmembrane and ATP-binding protein.
   
  0.569
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
Server load: low (14%) [HD]