STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VS_1403Amino acid ABC transporter. (342 aa)    
Predicted Functional Partners:
VS_1400
General L-amino acid transport ATP-binding protein.
 
 0.997
VS_1401
ABC transporter: Transmembrane protein.
 
 0.997
VS_1402
Amino-acid ABC transporter permease protein.
 
 
 0.997
VS_II0534
ABC transporter: ATP binding protein.
 
 0.877
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.849
VS_0477
Aerobic respiration control sensor protein ArcB.
   
 0.830
VS_0548
TyrA, Chorismate mutase T-prephenate dehydrogenase.
    
 0.786
VS_2614
Sensor protein barA.
   
 0.779
VS_0556
P-protein [Includes: Chorismate mutase,Prephenatedehydratase].
     
 0.769
VS_0964
Sensory box histidine kinase/response regulator.
   
 0.756
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.