STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VS_1519Putative anti-sigma regulatory factor. (109 aa)    
Predicted Functional Partners:
VS_2750
ABC transporter: ATP-binding protein.
   
  0.991
VS_2749
ABC transport protein: transmembrane protein (IM).
   
  0.990
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.985
VS_0477
Aerobic respiration control sensor protein ArcB.
  
 
 0.973
VS_1372
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  0.969
VS_2748
ABC transporter: type A secreted protein (SSA).
  
  0.969
VS_2614
Sensor protein barA.
  
 
 0.968
VS_3093
ThiH.
  
    0.927
VS_0804
Flagellar hook protein flgE.
   
    0.923
VS_0809
Peptidoglycan hydrolase flgJ.
   
    0.923
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.