STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VS_2141Transcriptional regulator. (447 aa)    
Predicted Functional Partners:
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.933
VS_0477
Aerobic respiration control sensor protein ArcB.
  
 0.882
VS_2505
Hypothetical sensory box sensor histidine kinase/response regulator.
  
 0.880
VS_0964
Sensory box histidine kinase/response regulator.
  
 0.874
VS_1155
Sensory box histidine kinase/response regulator.
  
 0.874
VS_2614
Sensor protein barA.
  
 0.836
VS_2757
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.835
VS_1504
Hypothetical protein.
   
 0.833
VS_II0449
Hypothetical protein.
   
 0.833
VS_1129
Signal transduction histidine kinase.
  
 0.811
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.