Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_2452Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (316 aa)    
Predicted Functional Partners:
VS_1537
Hypothetical protein; No homology to any previously reported sequences; Belongs to the LysR transcriptional regulatory family.
  
     0.768
VS_0886
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.762
VS_II0467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.761
VS_II1338
Putative transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.747
VS_II0164
Transcriptional regulators, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.735
VS_II0786
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.726
VS_II1296
Putative transcription regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.717
VS_II1333
Putative transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.710
VS_1641
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.705
VS_II1433
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.705
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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