STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VS_2510Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
VS_2508
Peptide ABC transporter, permease protein.
 
 0.992
VS_0077
Dipeptide transport system permease protein dppC.
 
 0.983
VS_2507
Peptide ABC transporter, permease protein.
 
 0.982
VS_0076
Dipeptide transport system permease protein dppB.
 
 0.950
VS_2506
Peptide ABC transporter, periplasmic peptide-binding protein.
 
 
 0.948
VS_II1266
ABC transporter: transmembrane protein.
 
 0.943
VS_0992
Oligopeptide transport system permease protein oppC.
 
 0.938
VS_II1265
ABC transporter: transmembrane protein.
 
 0.930
VS_0991
Oligopeptide transport system permease protein oppB.
 
 0.894
VS_1995
Peptide transport system permease protein sapC.
  
  0.883
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.