Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_2841Conserved hypothetical protein. (241 aa)    
Predicted Functional Partners:
VS_2839
DsrF protein; Belongs to the DsrF/TusC family.
 
  
 0.850
VS_2840
DsrE protein.
  
  
 0.840
VS_2838
DsrH protein.
     
 0.836
VS_1049
Hypothetical protein; Belongs to the UPF0304 family.
  
     0.683
VS_3001
Hypothetical protein.
  
     0.642
VS_II0739
Conserved hypothetical protein.
  
     0.590
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
    0.547
VS_2229
Hypothetical protein.
  
     0.531
VS_2801
Hypothetical protein.
  
     0.509
VS_1960
Hypothetical protein; Belongs to the UPF0263 family.
  
     0.494
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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