Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II0044DNA-binding response regulator. (234 aa)    
Predicted Functional Partners:
VS_II0043
Sensor histidine kinase.
 
 0.995
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.973
VS_0477
Aerobic respiration control sensor protein ArcB.
 
 0.969
VS_0964
Sensory box histidine kinase/response regulator.
 
 0.958
VS_1155
Sensory box histidine kinase/response regulator.
 
 0.955
VS_0157
Osmolarity sensor protein envZ.
 
 0.936
VS_2614
Sensor protein barA.
 
 0.903
VS_II0260
Sensor protein LuxN.
 
 0.890
VS_2917
Sensor protein cpxA.
 
 0.887
VS_II0675
Probable two-component system sensor kinase.
 
 0.873
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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