Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VS_II0109NADH oxidase. (414 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit.
    
  0.759
VS_0472
Putative glutamate synthase precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
  0.759
VS_0474
Glutamate synthase [NADPH] large chain.
    
  0.759
VS_1797
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.746
gcvP
Glycine dehydrogenase (Glycine cleavage system P-protein); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.738
VS_II0108
NADPH-flavin oxidoreductase; Belongs to the flavin oxidoreductase frp family.
    
 0.559
VS_II0274
Flavodoxin reductase family 1 protein.
    
 0.557
VS_II0345
Putative ferredoxin oxidoreductase protein.
    
 0.556
VS_2138
Putative glutamate synthetase; Belongs to the glutamate synthase family.
    
  0.517
VS_II1477
Putative dehydrogenase.
 
  
  0.458
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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