Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VS_II0180Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (146 aa)    
Predicted Functional Partners:
VS_II0179
Putative Sco1-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
     
 0.875
VS_1459
Cytochrome c oxidase polypeptide I homolog; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.834
VS_II0894
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.834
VS_II0178
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
 
 0.782
VS_II0181
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.722
VS_1460
Cytochrome c oxidase, subunit CcoO.
  
 
 0.695
VS_II0895
Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 
 0.695
VS_1461
Cytochrome c oxidase, subunit CcoQ.
  
  
 0.573
VS_0432
Ubiquinol-cytochrome c reductase, cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.539
VS_0433
Ubiquinol-cytochrome c reductase,cytochrome c1.
    
   0.539
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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