Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II0201Thermolabile hemolysin precursor (TL)-(Lecithin-dependent hemolysin) (LDH); Function of homologous gene experimentally demonstrated in another organism; enzyme. (427 aa)    
Predicted Functional Partners:
VS_1708
Putative phospholipase C precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.743
VS_II0972
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.730
VS_II0968
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.729
VS_II0976
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.728
VS_II0990
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.726
VS_II0413
Dipeptide/tripeptide permease.
  
     0.722
VS_II0984
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.720
VS_II0559
Putative disulfide oxidoreductase.
  
     0.714
VS_II0693
ABC-type metal ion transport system, periplasmic component/surface adhesin.
  
     0.713
VS_II0203
Lipase chaperone; Function of strongly homologous gene; factor.
  
   
 0.706
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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