Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VS_II0849Multidrug resistance protein A. (354 aa)    
Predicted Functional Partners:
VS_II0850
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
 
 
 0.997
VS_1541
Putative efflux pump outer membrane; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.950
VS_II0593
Putative outer membrane transport protein.
 
 0.942
VS_0418
Outer membrane protein TolC.
  
 0.850
VS_II0860
ABC transporter: Outer membrane protein (OMP).
  
 0.850
VS_II0920
Outer membrane protein.
  
 0.850
VS_II1144
Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.740
VS_II0918
Cation/multidrug efflux pump.
 
  
 0.676
VS_II1143
Putative multidrug efflux pump.
 
  
 0.671
VS_1393
Outer membrane protein.
  
 0.661
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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