Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II0862ABC transporter (IM-ABC). (712 aa)    
Predicted Functional Partners:
VS_II0861
ABC transporter, transmembrane protein-ATP-binding protein (IM, ABC).
 
  
  0.992
VS_II0858
ABC transporter: Membrane fusion protein (MFP).
 
  0.977
VS_II0509
ABC transporter: Transmembrane and ATP-binding protein.
 
  
  0.911
VS_II0860
ABC transporter: Outer membrane protein (OMP).
 
 
 0.900
VS_II0859
Hypothetical protein.
 
   
 0.889
VS_II0856
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.875
VS_II0008
Secretion protein, HlyD family.
 
  0.862
VS_II0511
ABC transporter: Membrane fusion protein.
 
  0.858
VS_II0855
Conserved hypothetical protein.
 
    0.815
VS_II0857
Hypothetical protein.
       0.784
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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