Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II0995Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (145 aa)    
Predicted Functional Partners:
VS_II0997
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.992
VS_II0993
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.979
vasA
Type VI secretion system; Function of strongly homologous gene; transporter.
 
  
 0.971
VS_II0998
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.968
VS_II0996
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.943
vasF
Type VI Secretion System, VasF; Function of strongly homologous gene; transporter.
 
  
 0.940
VS_II0990
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.917
VS_II0988
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.903
VS_II0987
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.868
VS_II0999
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.865
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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