Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vasHSigma 54 dependant transcriptional regulator; Function of homologous gene experimentally demonstrated in another organism; regulator. (542 aa)    
Predicted Functional Partners:
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.939
VS_0477
Aerobic respiration control sensor protein ArcB.
   
 0.870
VS_0964
Sensory box histidine kinase/response regulator.
   
 0.862
VS_1155
Sensory box histidine kinase/response regulator.
   
 0.862
VS_II1006
Chaperone ClpB; Function of homologous gene experimentally demonstrated in another organism; factor; Belongs to the ClpA/ClpB family.
  
  
 0.819
VS_2757
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.807
VS_2505
Hypothetical sensory box sensor histidine kinase/response regulator.
   
 0.770
VS_II1184
Hypothetical protein.
   
 0.734
VS_II0009
Putative two-component response regulator.
  
 
  0.706
VS_1685
Intracellular signaling protein (PAS,GAF,GGDEF domains).
   
 0.701
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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