Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II1016Hypothetical protein; No homology to any previously reported sequences. (177 aa)    
Predicted Functional Partners:
VS_II1018
Hypothetical protein; No homology to any previously reported sequences.
       0.777
VS_II1022
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.777
VS_II1015
Hypothetical protein; No homology to any previously reported sequences.
       0.773
VS_II1017
Hypothetical protein; No homology to any previously reported sequences.
       0.773
VS_II1019
Hypothetical protein; No homology to any previously reported sequences.
       0.773
VS_II1020
Hypothetical protein; No homology to any previously reported sequences.
       0.773
VS_II1021
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
tolB
Protein tolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.700
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.572
VS_0804
Flagellar hook protein flgE.
   
 0.538
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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