Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VS_II1024Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (319 aa)    
Predicted Functional Partners:
VS_2600
Membrane protein.
 
   
 0.772
VS_0203
Putative peptidase M23; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.764
VS_0267
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.603
VS_II0821
Membrane protein.
  
     0.594
VS_2620
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.536
VS_2878
Penicillin-binding protein 1A.
  
   
 0.525
VS_2330
Soluble lytic murein transglycosylase.
 
  
 0.470
VS_2345
Putative M50 family membrane-associated zinc metalloprotease precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.452
VS_2237
High-affinity zinc uptake system protein znuA precursor; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.451
VS_II1023
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.445
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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