Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II1065Hypothetical protein. (1688 aa)    
Predicted Functional Partners:
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
0.999
VS_0477
Aerobic respiration control sensor protein ArcB.
 
0.998
VS_2614
Sensor protein barA.
 
0.996
VS_0964
Sensory box histidine kinase/response regulator.
 
 
0.995
VS_1155
Sensory box histidine kinase/response regulator.
 
 
0.995
VS_2505
Hypothetical sensory box sensor histidine kinase/response regulator.
 
0.995
VS_0476
Sensory box/GGDEF family protein.
 
 0.992
VS_II1184
Hypothetical protein.
 
 0.987
VS_1129
Signal transduction histidine kinase.
 
 
0.985
VS_II1524
Putative two-component sensor.
 
0.982
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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