Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VS_II1271Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
VS_II1272
Putative NADH-flavin reductase.
 
     0.799
VS_II0467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.760
VS_II0164
Transcriptional regulators, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.759
VS_II0426
Glycine cleavage system transcriptional activator (Gcv operon activator); Belongs to the LysR transcriptional regulatory family.
  
     0.757
VS_II1115
Transcriptional regulators, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.722
VS_1538
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.717
VS_II1296
Putative transcription regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.703
VS_II1333
Putative transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.696
VS_2879
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.692
VS_II1338
Putative transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.677
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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