STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
31.t00025Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (107 aa)    
Predicted Functional Partners:
3.t00072
U5 snRNP-specific 200kd protein, putative.
   
 0.999
10.t00027
U1snRNP-specific protein, putative.
   
 0.999
48.t00017
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
194.t00015
Splicing factor3B subunit 2, putative.
    
 0.999
216.t00008
DEAD/DEAH box helicase, putative; Belongs to the DEAD box helicase family.
   
 0.999
91.t00006
Myb-like DNA-binding domain containing protein.
    
 
 0.999
7.t00018
Splicing factor 3A subunit 3, putative.
   
 0.999
153.t00011
Uncharacterized protein.
    
 0.999
75.t00014
Small nuclear ribonucleoprotein F, putative.
   
 0.999
208.t00013
Crooked neck protein, putative.
    
 
 0.999
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.