STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI_135940Small GTP binding protein rab1a, putative. (247 aa)    
Predicted Functional Partners:
7.t00011
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.676
197.t00003
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.654
159.t00009
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.644
59.t00012
Sedlin, putative.
    
 0.642
63.t00001
Uncharacterized protein.
    
 0.639
EhRabX8
Small GTPase EhRabX8.
  
 0.621
EhGGTIIb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.583
85.t00020
Sec7 domain protein.
    
 0.577
52.t00008
Rab GTPase activating protein, putative.
    
 0.576
97.t00019
Syntaxin 5-like protein, putative.
    
 0.574
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.