STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
126.t00020Leucine rich repeat protein, BspA family. (589 aa)    
Predicted Functional Partners:
12.t00061
Major facilitator superfamily protein.
   
 0.711
152.t00013
Uncharacterized protein.
   
 0.694
520.t00002
DNA polymerase, putative.
   
 0.689
58.t00022
Uncharacterized protein.
   
 0.686
22.t00018
Uncharacterized protein.
   
 0.666
298.t00004
Uncharacterized protein.
   
 0.665
10.t00027
U1snRNP-specific protein, putative.
   
 0.642
171.t00014
Ankyrin repeat protein, putative.
   
 0.641
74.t00043
Small nuclear ribonucleoprotein Sm D3.
   
 0.613
9.t00057
Ankyrin repeat/GTPase-activator domain containing protein.
   
 0.600
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.