STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
34.t00007Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (439 aa)    
Predicted Functional Partners:
123.t00017
Vacuolar sorting protein VPS9, putative.
   
 0.999
EhGGTIIb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
 0.716
EhRabX10
Small GTPase EhRabX10.
   
 0.716
23.t00003
Uncharacterized protein.
    
 0.699
25.t00001
Rab geranylgeranyltransferase alpha subunit, putative.
    
 0.655
37.t00033
Rab family GTPase.
   
 0.639
201.t00023
Rab family GTPase.
   
 0.639
36.t00016
Rab family GTPase.
   
 0.639
45.t00024
Rab family GTPase.
   
 0.639
183.t00023
Rab family GTPase.
   
 0.639
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.