STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
100.t00020U2 auxiliary factor, putative. (227 aa)    
Predicted Functional Partners:
77.t00020
U2 snRNP auxiliary factor large subunit, putative.
   
 0.994
69.t00024
U2 snRNP auxiliary factor, putative.
  
 
 
0.911
13.t00007
U2 snRNP auxiliary factor small subunit, putative.
  
 
 
0.905
108.t00012
Splicing factor, arginine/serine-rich, putative.
   
 0.787
EHI_153810
RNA recognition motif domain containing protein.
   
 0.682
13.t00017
U1 small nuclear ribonucleoprotein subunit, putative.
   
 0.682
100.t00009
Nuclear cap-binding protein subunit 2.
   
 0.680
59.t00037
Helicase, putative.
   
 0.656
333.t00008
Uncharacterized protein.
   
 0.644
EHI_129760
SON DNA binding protein, putative.
   
 0.640
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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