217.t00004 protein (Entamoeba histolytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

217.t00004

Uncharacterized protein. (175 aa)

Predicted Functional Partners:

298.t00004

0.841

79.t00027

0.700

472.t00007

0.686

38.t00039

0.683

878.t00001

0.682

GK

0.669

63.t00025

0.666

361.t00008

0.664

117.t00031

0.648

72.t00020

0.631

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
117.t00031	217.t00004	C4LW10	C4MBR6	Ribosomal protein S29, putative.	Uncharacterized protein.	0.648
117.t00031	361.t00008	C4LW10	C4M7U0	Ribosomal protein S29, putative.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.999
117.t00031	38.t00039	C4LW10	C4LZ47	Ribosomal protein S29, putative.	Nucleoside diphosphate kinase, putative.	0.992
117.t00031	472.t00007	C4LW10	C4M5B7	Ribosomal protein S29, putative.	40S ribosomal protein S23, putative; Belongs to the universal ribosomal protein uS12 family.	0.999
117.t00031	79.t00027	C4LW10	B1N2I3	Ribosomal protein S29, putative.	40S ribosomal protein S14, putative; Belongs to the universal ribosomal protein uS11 family.	0.999
117.t00031	878.t00001	C4LW10	C4M5A0	Ribosomal protein S29, putative.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
217.t00004	117.t00031	C4MBR6	C4LW10	Uncharacterized protein.	Ribosomal protein S29, putative.	0.648
217.t00004	298.t00004	C4MBR6	C4M8W4	Uncharacterized protein.	Uncharacterized protein.	0.841
217.t00004	361.t00008	C4MBR6	C4M7U0	Uncharacterized protein.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.664
217.t00004	38.t00039	C4MBR6	C4LZ47	Uncharacterized protein.	Nucleoside diphosphate kinase, putative.	0.683
217.t00004	472.t00007	C4MBR6	C4M5B7	Uncharacterized protein.	40S ribosomal protein S23, putative; Belongs to the universal ribosomal protein uS12 family.	0.686
217.t00004	63.t00025	C4MBR6	C4M4L4	Uncharacterized protein.	Uncharacterized protein.	0.666
217.t00004	72.t00020	C4MBR6	C4LTH5	Uncharacterized protein.	Uncharacterized protein.	0.631
217.t00004	79.t00027	C4MBR6	B1N2I3	Uncharacterized protein.	40S ribosomal protein S14, putative; Belongs to the universal ribosomal protein uS11 family.	0.700
217.t00004	878.t00001	C4MBR6	C4M5A0	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.682
217.t00004	GK	C4MBR6	Q401L6	Uncharacterized protein.	Glycerate kinase, putative.	0.669
298.t00004	217.t00004	C4M8W4	C4MBR6	Uncharacterized protein.	Uncharacterized protein.	0.841
298.t00004	38.t00039	C4M8W4	C4LZ47	Uncharacterized protein.	Nucleoside diphosphate kinase, putative.	0.419
298.t00004	63.t00025	C4M8W4	C4M4L4	Uncharacterized protein.	Uncharacterized protein.	0.668
298.t00004	72.t00020	C4M8W4	C4LTH5	Uncharacterized protein.	Uncharacterized protein.	0.619