STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI96635.1Flp pilus assembly protein TadD, contains TPR repeats. (291 aa)    
Predicted Functional Partners:
SFI96610.1
Prepilin peptidase CpaA.
 
   
 0.967
SFI96665.1
TPR repeat-containing protein.
 
     0.928
SFI96580.1
Hypothetical protein.
 
     0.916
SFI96784.1
Pilus assembly protein CpaE.
 
  
 0.912
SFI96721.1
Tight adherence protein B.
 
  
 0.882
SFI96695.1
Tight adherence protein C.
 
  
 0.846
SFI96843.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.835
SFI96894.1
Pilus assembly protein CpaB.
 
  
 0.829
SFI96817.1
Outer membrane protein OmpA.
 
     0.823
SFI96946.1
Hypothetical protein.
 
     0.794
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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