STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ05896.1TRAP-type C4-dicarboxylate transport system, small permease component. (174 aa)    
Predicted Functional Partners:
SFJ05866.1
TRAP transporter, DctM subunit.
  0.996
SFJ05928.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.990
SFJ91666.1
TRAP transporter, DctM subunit.
 
  0.823
SFJ05834.1
Predicted transcription regulator, contains HTH domain, MarR family.
 
     0.803
SFJ91631.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.800
SFJ05956.1
Sensor histidine kinase inhibitor, KipI family.
       0.510
SFJ05983.1
Allophanate hydrolase.
       0.508
pxpA
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.507
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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