STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ27096.1Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family. (103 aa)    
Predicted Functional Partners:
SFJ27084.1
Iron-regulated ABC transporter membrane component SufB.
  
  
 0.873
SFJ81697.1
N-acetylmuramoyl-L-alanine amidase.
 
    0.873
SFJ27149.1
Hypothetical protein.
       0.816
SFJ27059.1
Cysteine desulfurase.
     
 0.809
SFJ27122.1
Hypothetical protein.
       0.773
SFJ27205.1
Fe-S cluster assembly ATP-binding protein.
  
  
 0.749
SFJ27227.1
Fe-S cluster assembly protein SufD.
  
  
 0.734
SFJ27256.1
Hypothetical protein.
     
 0.729
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.709
SFJ27033.1
Transcriptional regulator, BadM/Rrf2 family.
     
 0.670
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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