STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ38985.1NIPSNAP protein. (104 aa)    
Predicted Functional Partners:
SFJ39053.1
L(+)-tartrate dehydratase alpha subunit.
 
     0.737
SFJ39036.1
L(+)-tartrate dehydratase beta subunit.
       0.692
SFJ39010.1
Conserved hypothetical integral membrane protein.
       0.689
SFJ39103.1
Succinate dehydrogenase subunit C.
 
     0.621
SFJ39128.1
Fumarate reductase subunit C.
       0.550
SFJ39078.1
Fumarate reductase flavoprotein subunit.
       0.548
SFJ39144.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.539
SFK05116.1
Putative cyclase.
  
     0.412
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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