STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAD-xylose isomerase; Belongs to the xylose isomerase family. (431 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.997
SFJ85137.1
Mannitol 2-dehydrogenase.
     
 0.949
SFJ81421.1
Fructokinase.
     
 0.926
SFJ39494.1
Sugar phosphate isomerase/epimerase.
 
  
 0.851
SFJ15047.1
Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.841
SFJ39445.1
LacI family transcriptional regulator.
 
   
 0.805
SFJ39516.1
Predicted dehydrogenase.
 
  
  0.779
SFK01982.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
     
 0.749
SFK14294.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
     
 0.749
SFK02002.1
(R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase.
     
 0.699
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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