STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ35152.1Flp pilus assembly protein TadD, contains TPR repeats. (266 aa)    
Predicted Functional Partners:
SFJ35351.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.906
SFJ35313.1
Pilus assembly protein CpaE.
 
     0.874
SFJ35242.1
Tight adherence protein C.
 
  
 0.849
SFJ35259.1
Tight adherence protein B.
 
  
 0.845
SFJ35380.1
Pilus assembly protein CpaB.
 
  
 0.838
SFJ35181.1
Uncharacterized membrane protein.
 
    0.822
SFJ35206.1
Flp pilus assembly protein TadG.
 
  
 0.759
SFJ35289.1
Pilus assembly protein CpaF.
 
  
 0.738
SFJ35405.1
Pilus assembly protein Flp/PilA.
 
     0.663
SFJ34861.1
Outer membrane protein, adhesin transport system.
  
     0.628
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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