Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFJ47713.1 | SFJ47739.1 | SAMN04488138_105191 | SAMN04488138_105192 | Protein of unknown function. | Ferredoxin-NADP reductase. | 0.958 |
SFJ47713.1 | SFJ47760.1 | SAMN04488138_105191 | SAMN04488138_105193 | Protein of unknown function. | Hypothetical protein. | 0.959 |
SFJ47713.1 | SFJ47788.1 | SAMN04488138_105191 | SAMN04488138_105194 | Protein of unknown function. | Aminomethyltransferase; Belongs to the GcvT family. | 0.960 |
SFJ47713.1 | SFJ48262.1 | SAMN04488138_105191 | SAMN04488138_105212 | Protein of unknown function. | Aminomethyltransferase; Belongs to the GcvT family. | 0.826 |
SFJ47739.1 | SFJ47713.1 | SAMN04488138_105192 | SAMN04488138_105191 | Ferredoxin-NADP reductase. | Protein of unknown function. | 0.958 |
SFJ47739.1 | SFJ47760.1 | SAMN04488138_105192 | SAMN04488138_105193 | Ferredoxin-NADP reductase. | Hypothetical protein. | 0.960 |
SFJ47739.1 | SFJ47788.1 | SAMN04488138_105192 | SAMN04488138_105194 | Ferredoxin-NADP reductase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.933 |
SFJ47739.1 | SFJ48262.1 | SAMN04488138_105192 | SAMN04488138_105212 | Ferredoxin-NADP reductase. | Aminomethyltransferase; Belongs to the GcvT family. | 0.915 |
SFJ47739.1 | SFJ78211.1 | SAMN04488138_105192 | SAMN04488138_11073 | Ferredoxin-NADP reductase. | Aminomethyltransferase. | 0.533 |
SFJ47739.1 | gcvP | SAMN04488138_105192 | SAMN04488138_11075 | Ferredoxin-NADP reductase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.404 |
SFJ47739.1 | glyA | SAMN04488138_105192 | SAMN04488138_101184 | Ferredoxin-NADP reductase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.415 |
SFJ47760.1 | SFJ47713.1 | SAMN04488138_105193 | SAMN04488138_105191 | Hypothetical protein. | Protein of unknown function. | 0.959 |
SFJ47760.1 | SFJ47739.1 | SAMN04488138_105193 | SAMN04488138_105192 | Hypothetical protein. | Ferredoxin-NADP reductase. | 0.960 |
SFJ47760.1 | SFJ47788.1 | SAMN04488138_105193 | SAMN04488138_105194 | Hypothetical protein. | Aminomethyltransferase; Belongs to the GcvT family. | 0.904 |
SFJ47760.1 | SFJ48262.1 | SAMN04488138_105193 | SAMN04488138_105212 | Hypothetical protein. | Aminomethyltransferase; Belongs to the GcvT family. | 0.828 |
SFJ47788.1 | SFJ47713.1 | SAMN04488138_105194 | SAMN04488138_105191 | Aminomethyltransferase; Belongs to the GcvT family. | Protein of unknown function. | 0.960 |
SFJ47788.1 | SFJ47739.1 | SAMN04488138_105194 | SAMN04488138_105192 | Aminomethyltransferase; Belongs to the GcvT family. | Ferredoxin-NADP reductase. | 0.933 |
SFJ47788.1 | SFJ47760.1 | SAMN04488138_105194 | SAMN04488138_105193 | Aminomethyltransferase; Belongs to the GcvT family. | Hypothetical protein. | 0.904 |
SFJ47788.1 | SFJ48262.1 | SAMN04488138_105194 | SAMN04488138_105212 | Aminomethyltransferase; Belongs to the GcvT family. | Aminomethyltransferase; Belongs to the GcvT family. | 0.864 |
SFJ47788.1 | SFJ58383.1 | SAMN04488138_105194 | SAMN04488138_106228 | Aminomethyltransferase; Belongs to the GcvT family. | Dihydrolipoamide dehydrogenase. | 0.928 |
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