STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ57576.1N-acyl-L-homoserine lactone synthetase. (212 aa)    
Predicted Functional Partners:
SFJ57605.1
Regulatory protein, luxR family.
 
 
 0.963
SFJ57556.1
Exodeoxyribonuclease-5.
 
   
 0.800
SFJ61629.1
Response regulator receiver domain-containing protein.
  
     0.765
SFJ68173.1
LuxR family transcriptional regulator.
 
 
 0.758
SFI99909.1
DNA-binding transcriptional regulator, CsgD family.
  
 
 0.557
SFJ55674.1
Regulatory protein, luxR family.
  
 
 0.557
SFK01906.1
Hypothetical protein.
  
 
 0.557
SFJ74949.1
Hypothetical protein.
  
  
 0.534
SFJ24098.1
Hpt domain-containing protein.
     
 0.522
SFJ69375.1
PAS domain-containing protein.
  
    0.511
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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