STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ62261.1HlyD family secretion protein. (438 aa)    
Predicted Functional Partners:
SFJ62236.1
ABC transporter transmembrane region.
  
 0.969
macB
Macrolide transport system ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.901
SFJ34885.1
ATP-binding cassette, subfamily C, LapB.
 0.896
SFJ93730.1
ATP-binding cassette, subfamily C, LapB.
 0.867
SFJ34861.1
Outer membrane protein, adhesin transport system.
 
 0.781
SFI99219.1
Outer membrane protein.
  
 0.718
SFJ93754.1
Outer membrane protein, adhesin transport system.
 
  0.717
SFJ74614.1
Hemolysin-type calcium-binding repeat-containing protein.
 
  
 0.708
SFK07709.1
Outer membrane protein, multidrug efflux system.
  
 0.705
SFJ62285.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
       0.703
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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