STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ69563.1Ca2+-binding protein, RTX toxin-related. (904 aa)    
Predicted Functional Partners:
SFJ93773.1
Hypothetical protein.
 
  0.782
SFJ93730.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.719
SFJ00076.1
Hypothetical protein.
  
     0.697
SFK07553.1
Pectate lyase superfamily protein.
 
 
   0.678
SFJ34885.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.665
SFJ93705.1
Membrane fusion protein, adhesin transport system.
 
  
 0.665
SFJ95865.1
Putative peptidoglycan binding domain-containing protein.
  
     0.648
SFK03183.1
Core-2/I-Branching enzyme.
  
     0.648
SFJ62756.1
Hypothetical protein.
  
     0.644
SFJ62236.1
ABC transporter transmembrane region.
 
 
 0.631
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.