Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFJ64082.1 | SFJ68759.1 | SAMN04488138_107169 | SAMN04488138_10865 | Exodeoxyribonuclease-3. | DNA-3-methyladenine glycosylase II. | 0.895 |
SFJ64082.1 | SFJ71102.1 | SAMN04488138_107169 | SAMN04488138_108181 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.939 |
SFJ64082.1 | nth | SAMN04488138_107169 | SAMN04488138_11367 | Exodeoxyribonuclease-3. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.936 |
SFJ64082.1 | polA | SAMN04488138_107169 | SAMN04488138_11369 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.916 |
SFJ68678.1 | SFJ68725.1 | SAMN04488138_10862 | SAMN04488138_10864 | 5-methylcytosine-specific restriction endonuclease McrA. | Phospholipase/carboxylesterase. | 0.512 |
SFJ68678.1 | SFJ68759.1 | SAMN04488138_10862 | SAMN04488138_10865 | 5-methylcytosine-specific restriction endonuclease McrA. | DNA-3-methyladenine glycosylase II. | 0.543 |
SFJ68725.1 | SFJ68678.1 | SAMN04488138_10864 | SAMN04488138_10862 | Phospholipase/carboxylesterase. | 5-methylcytosine-specific restriction endonuclease McrA. | 0.512 |
SFJ68725.1 | SFJ68759.1 | SAMN04488138_10864 | SAMN04488138_10865 | Phospholipase/carboxylesterase. | DNA-3-methyladenine glycosylase II. | 0.963 |
SFJ68725.1 | SFJ68780.1 | SAMN04488138_10864 | SAMN04488138_10866 | Phospholipase/carboxylesterase. | Precorrin-6x reductase CbiJ/CobK. | 0.816 |
SFJ68725.1 | SFJ68811.1 | SAMN04488138_10864 | SAMN04488138_10867 | Phospholipase/carboxylesterase. | uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | 0.588 |
SFJ68759.1 | SFJ64082.1 | SAMN04488138_10865 | SAMN04488138_107169 | DNA-3-methyladenine glycosylase II. | Exodeoxyribonuclease-3. | 0.895 |
SFJ68759.1 | SFJ68678.1 | SAMN04488138_10865 | SAMN04488138_10862 | DNA-3-methyladenine glycosylase II. | 5-methylcytosine-specific restriction endonuclease McrA. | 0.543 |
SFJ68759.1 | SFJ68725.1 | SAMN04488138_10865 | SAMN04488138_10864 | DNA-3-methyladenine glycosylase II. | Phospholipase/carboxylesterase. | 0.963 |
SFJ68759.1 | SFJ68780.1 | SAMN04488138_10865 | SAMN04488138_10866 | DNA-3-methyladenine glycosylase II. | Precorrin-6x reductase CbiJ/CobK. | 0.816 |
SFJ68759.1 | SFJ68811.1 | SAMN04488138_10865 | SAMN04488138_10867 | DNA-3-methyladenine glycosylase II. | uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | 0.637 |
SFJ68759.1 | SFJ71102.1 | SAMN04488138_10865 | SAMN04488138_108181 | DNA-3-methyladenine glycosylase II. | Exodeoxyribonuclease-3. | 0.895 |
SFJ68759.1 | SFJ89136.1 | SAMN04488138_10865 | SAMN04488138_11366 | DNA-3-methyladenine glycosylase II. | AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase. | 0.719 |
SFJ68759.1 | nth | SAMN04488138_10865 | SAMN04488138_11367 | DNA-3-methyladenine glycosylase II. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.564 |
SFJ68759.1 | polA | SAMN04488138_10865 | SAMN04488138_11369 | DNA-3-methyladenine glycosylase II. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.721 |
SFJ68759.1 | recA | SAMN04488138_10865 | SAMN04488138_102165 | DNA-3-methyladenine glycosylase II. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.561 |
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