Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFJ10979.1 | SFJ74931.1 | SAMN04488138_10222 | SAMN04488138_109117 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA helicase RecQ. | 0.992 |
SFJ10979.1 | SFJ96276.1 | SAMN04488138_10222 | SAMN04488138_11647 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA helicase, Rep family. | 0.561 |
SFJ10979.1 | SFJ96743.1 | SAMN04488138_10222 | SAMN04488138_11676 | DNA repair exonuclease SbcCD nuclease subunit. | Hypothetical protein. | 0.997 |
SFJ10979.1 | SFK05397.1 | SAMN04488138_10222 | SAMN04488138_12335 | DNA repair exonuclease SbcCD nuclease subunit. | Hypothetical protein. | 0.997 |
SFJ10979.1 | mutL | SAMN04488138_10222 | SAMN04488138_12116 | DNA repair exonuclease SbcCD nuclease subunit. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.495 |
SFJ10979.1 | mutS | SAMN04488138_10222 | SAMN04488138_1098 | DNA repair exonuclease SbcCD nuclease subunit. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.468 |
SFJ10979.1 | polA | SAMN04488138_10222 | SAMN04488138_11369 | DNA repair exonuclease SbcCD nuclease subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
SFJ10979.1 | recA | SAMN04488138_10222 | SAMN04488138_102165 | DNA repair exonuclease SbcCD nuclease subunit. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.915 |
SFJ10979.1 | topA | SAMN04488138_10222 | SAMN04488138_10135 | DNA repair exonuclease SbcCD nuclease subunit. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.942 |
SFJ44892.1 | SFJ74931.1 | SAMN04488138_10554 | SAMN04488138_109117 | Exonuclease RecJ. | ATP-dependent DNA helicase RecQ. | 0.945 |
SFJ44892.1 | SFJ96276.1 | SAMN04488138_10554 | SAMN04488138_11647 | Exonuclease RecJ. | ATP-dependent DNA helicase, Rep family. | 0.558 |
SFJ44892.1 | mutL | SAMN04488138_10554 | SAMN04488138_12116 | Exonuclease RecJ. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.575 |
SFJ44892.1 | mutS | SAMN04488138_10554 | SAMN04488138_1098 | Exonuclease RecJ. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.538 |
SFJ44892.1 | polA | SAMN04488138_10554 | SAMN04488138_11369 | Exonuclease RecJ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.613 |
SFJ44892.1 | recA | SAMN04488138_10554 | SAMN04488138_102165 | Exonuclease RecJ. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.424 |
SFJ44892.1 | topA | SAMN04488138_10554 | SAMN04488138_10135 | Exonuclease RecJ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.481 |
SFJ74931.1 | SFJ10979.1 | SAMN04488138_109117 | SAMN04488138_10222 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD nuclease subunit. | 0.992 |
SFJ74931.1 | SFJ44892.1 | SAMN04488138_109117 | SAMN04488138_10554 | ATP-dependent DNA helicase RecQ. | Exonuclease RecJ. | 0.945 |
SFJ74931.1 | SFJ96276.1 | SAMN04488138_109117 | SAMN04488138_11647 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase, Rep family. | 0.980 |
SFJ74931.1 | SFJ96743.1 | SAMN04488138_109117 | SAMN04488138_11676 | ATP-dependent DNA helicase RecQ. | Hypothetical protein. | 0.972 |
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