STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ95980.1Hydroxyquinol 1,2-dioxygenase. (288 aa)    
Predicted Functional Partners:
SFJ97392.1
L-alanine-DL-glutamate epimerase.
  
 
 0.962
SFK05036.1
Muconolactone delta-isomerase.
 
  
 0.916
SFJ96021.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.898
SFJ31354.1
Alcohol dehydrogenase, class IV.
   
 0.883
SFJ96007.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.874
SFJ95993.1
TRAP transporter, DctM subunit.
 
     0.818
SFJ91957.1
Hypothetical protein.
   
 0.762
SFJ96037.1
3-hydroxypropanoate dehydrogenase.
 
     0.757
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
 
      0.724
SFK04991.1
3-oxoadipate enol-lactonase.
  
  
 0.712
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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