STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ98399.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (372 aa)    
Predicted Functional Partners:
SFK00444.1
Hypothetical protein.
  
 
   0.490
SFJ11313.1
Phage prohead protease, HK97 family.
  
    0.466
SFJ02292.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
  
    0.452
SFK12333.1
Phage tail tape measure protein, lambda family.
  
    0.450
SFJ98340.1
Glutathione S-transferase.
       0.447
SFJ98360.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.447
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.447
SFK03933.1
comF family protein.
   
    0.428
SFJ10283.1
Transcriptional regulator, TetR family.
  
     0.411
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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