Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFJ70535.1 | lspA | SAMN04488138_108148 | SAMN04488138_12120 | Periplasmic chaperone for outer membrane proteins SurA. | Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.556 |
SFK02809.1 | SFK02831.1 | SAMN04488138_12117 | SAMN04488138_12118 | Zinc protease. | Zinc protease; Belongs to the peptidase M16 family. | 0.993 |
SFK02809.1 | SFK02849.1 | SAMN04488138_12117 | SAMN04488138_12119 | Zinc protease. | Beta-barrel assembly machine subunit BamF. | 0.710 |
SFK02809.1 | SFK02911.1 | SAMN04488138_12117 | SAMN04488138_12122 | Zinc protease. | Uncharacterized conserved protein, heparinase superfamily. | 0.539 |
SFK02809.1 | SFK02929.1 | SAMN04488138_12117 | SAMN04488138_12123 | Zinc protease. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.418 |
SFK02809.1 | lspA | SAMN04488138_12117 | SAMN04488138_12120 | Zinc protease. | Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.665 |
SFK02809.1 | purH | SAMN04488138_12117 | SAMN04488138_12121 | Zinc protease. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.638 |
SFK02831.1 | SFK02809.1 | SAMN04488138_12118 | SAMN04488138_12117 | Zinc protease; Belongs to the peptidase M16 family. | Zinc protease. | 0.993 |
SFK02831.1 | SFK02849.1 | SAMN04488138_12118 | SAMN04488138_12119 | Zinc protease; Belongs to the peptidase M16 family. | Beta-barrel assembly machine subunit BamF. | 0.710 |
SFK02831.1 | SFK02911.1 | SAMN04488138_12118 | SAMN04488138_12122 | Zinc protease; Belongs to the peptidase M16 family. | Uncharacterized conserved protein, heparinase superfamily. | 0.536 |
SFK02831.1 | SFK02929.1 | SAMN04488138_12118 | SAMN04488138_12123 | Zinc protease; Belongs to the peptidase M16 family. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.498 |
SFK02831.1 | lspA | SAMN04488138_12118 | SAMN04488138_12120 | Zinc protease; Belongs to the peptidase M16 family. | Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.665 |
SFK02831.1 | purH | SAMN04488138_12118 | SAMN04488138_12121 | Zinc protease; Belongs to the peptidase M16 family. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.633 |
SFK02849.1 | SFK02809.1 | SAMN04488138_12119 | SAMN04488138_12117 | Beta-barrel assembly machine subunit BamF. | Zinc protease. | 0.710 |
SFK02849.1 | SFK02831.1 | SAMN04488138_12119 | SAMN04488138_12118 | Beta-barrel assembly machine subunit BamF. | Zinc protease; Belongs to the peptidase M16 family. | 0.710 |
SFK02849.1 | SFK02911.1 | SAMN04488138_12119 | SAMN04488138_12122 | Beta-barrel assembly machine subunit BamF. | Uncharacterized conserved protein, heparinase superfamily. | 0.750 |
SFK02849.1 | SFK02929.1 | SAMN04488138_12119 | SAMN04488138_12123 | Beta-barrel assembly machine subunit BamF. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.564 |
SFK02849.1 | lspA | SAMN04488138_12119 | SAMN04488138_12120 | Beta-barrel assembly machine subunit BamF. | Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.784 |
SFK02849.1 | purH | SAMN04488138_12119 | SAMN04488138_12121 | Beta-barrel assembly machine subunit BamF. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.759 |
SFK02911.1 | SFK02809.1 | SAMN04488138_12122 | SAMN04488138_12117 | Uncharacterized conserved protein, heparinase superfamily. | Zinc protease. | 0.539 |
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