STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK05277.1LacI family transcriptional regulator. (384 aa)    
Predicted Functional Partners:
SFK08653.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.923
SFJ60850.1
Phosphocarrier protein.
   
 
 0.867
SFJ47276.1
LacI family transcriptional regulator.
  
     0.770
SFJ39445.1
LacI family transcriptional regulator.
  
 
  0.652
SFK05240.1
Amino acid ABC transporter membrane protein, PAAT family /amino acid ABC transporter ATP-binding protein, PAAT family.
 
     0.617
SFK05256.1
Polar amino acid transport system substrate-binding protein.
 
     0.613
SFJ24098.1
Hpt domain-containing protein.
    
 
 0.511
SFK05198.1
Glycine/D-amino acid oxidase.
 
     0.506
SFK05220.1
Predicted dehydrogenase.
 
     0.484
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
 
 
 0.443
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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