STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK12420.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
SFK12461.1
Hypothetical protein.
 
     0.951
SFK12443.1
Hypothetical protein.
 
     0.951
SFK12399.1
Hypothetical protein.
 
     0.947
SFK12483.1
Predicted phage recombinase, RecA/RadA family.
 
     0.944
SFK12521.1
Phage portal protein, lambda family.
 
     0.894
SFK12500.1
Prohead serine protease.
 
     0.883
SFK12552.1
Phage terminase, large subunit GpA.
 
     0.883
SFK12569.1
Hypothetical protein.
 
     0.882
SFK12333.1
Phage tail tape measure protein, lambda family.
 
     0.879
SFK12581.1
Hypothetical protein.
 
     0.874
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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