STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK14919.1Putative phage cell wall peptidase, NlpC/P60 family. (149 aa)    
Predicted Functional Partners:
SFK14938.1
Phage conserved hypothetical protein BR0599.
 
     0.957
SFK14899.1
Putative phage tail protein.
 
     0.952
SFK14883.1
Protein of unknown function.
 
  
 0.950
SFK12316.1
TIGR02217 family protein.
 
     0.870
SFK12270.1
Uncharacterized conserved protein.
 
     0.817
SFJ26079.1
Large terminase phage packaging protein.
 
     0.810
SFJ26112.1
Phage portal protein.
 
     0.797
SFK14863.1
Hypothetical protein.
       0.762
SFJ26169.1
Protein of unknown function.
 
  
 0.665
SFJ61698.1
Lytic murein transglycosylase.
     
 0.525
Your Current Organism:
Celeribacter halophilus
NCBI taxonomy Id: 576117
Other names: C. halophilus, CGMCC 1.8891, Celeribacter halophilus (Wang et al. 2012) Lai et al. 2014, DSM 26270, Huaishuia halophila, Huaishuia halophila Wang et al. 2012, LMG 24854, LMG:24854, MCCC 1A06432, Pseudoruegeria sp. ZXM137, strain ZXM137
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