STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK20800.1Cell fate regulator YlbF, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family. (145 aa)    
Predicted Functional Partners:
SDK25054.1
Cell fate regulator YmcA, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family.
  
 
 
 0.960
SDK20389.1
Uncharacterized protein YlaN, UPF0358 family; Belongs to the UPF0358 family.
 
     0.782
SDL24331.1
Uncharacterized protein YuzB, UPF0349 family.
  
     0.681
SDK68507.1
Uncharacterized protein YtpQ, UPF0354 family.
  
     0.674
SDK52814.1
Ferredoxin.
  
     0.656
SDK73120.1
Uncharacterized protein YjbK.
  
     0.646
SDL07932.1
Uncharacterized membrane protein YgaE, UPF0421/DUF939 family.
  
     0.644
SDK20772.1
YugN-like family protein.
 
     0.638
SDL07679.1
Inner membrane protein.
  
     0.604
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.590
Your Current Organism:
Salinicoccus qingdaonensis
NCBI taxonomy Id: 576118
Other names: CGMCC 1.8895, LMG 24855, LMG:24855, S. qingdaonensis, Salinicoccus qingdaonensis Qu et al. 2012, Salinicoccus sp. ZXM223, strain ZXM223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.