STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK94994.1Helix-turn-helix. (279 aa)    
Predicted Functional Partners:
SDK42596.1
Transcriptional regulator.
   
 
  0.683
SDK63447.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.650
SDK98154.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.614
SDK31600.1
Hypothetical protein.
  
     0.545
SDK94941.1
YfbU domain-containing protein.
       0.532
SDK94970.1
Hypothetical protein.
       0.532
SDK95024.1
Heat induced stress protein YflT.
       0.521
SDK52150.1
Tetratricopeptide repeat-containing protein.
  
 
  0.491
SDK77854.1
Two-component signal transduction system YycFG, regulatory protein YycH.
  
     0.444
SDL13207.1
ABC-2 type transport system permease protein.
  
     0.408
Your Current Organism:
Salinicoccus qingdaonensis
NCBI taxonomy Id: 576118
Other names: CGMCC 1.8895, LMG 24855, LMG:24855, S. qingdaonensis, Salinicoccus qingdaonensis Qu et al. 2012, Salinicoccus sp. ZXM223, strain ZXM223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.