STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY27972.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (251 aa)    
Predicted Functional Partners:
SDY21822.1
Acyl transferase domain-containing protein.
  
 0.867
SDY21843.1
Hypothetical protein.
  
 0.867
SDY77593.1
Glutamate synthase (NADPH) large subunit.
     
 0.764
SDY21872.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 0.733
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.672
SDY30676.1
Ferredoxin-NADP reductase.
   
 0.667
SDY22179.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.667
SDY88214.1
Ferredoxin-NADP reductase.
   
 0.667
SDY21570.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
 
 
 0.652
SDY27944.1
Hypothetical protein.
       0.634
Your Current Organism:
Lentibacter algarum
NCBI taxonomy Id: 576131
Other names: CGMCC 1.10234, L. algarum, LMG 24861, LMG:24861, Lentibacter algarum Li et al. 2012, alpha proteobacterium ZXM098, alpha proteobacterium ZXM100, strain ZXM100
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